Detalhe da pesquisa
1.
Large-scale benchmarking of circRNA detection tools reveals large differences in sensitivity but not in precision.
Nat Methods
; 20(8): 1159-1169, 2023 08.
Artigo
em Inglês
| MEDLINE | ID: mdl-37443337
2.
The SpliZ generalizes 'percent spliced in' to reveal regulated splicing at single-cell resolution.
Nat Methods
; 19(3): 307-310, 2022 03.
Artigo
em Inglês
| MEDLINE | ID: mdl-35241832
3.
TGS1 impacts snRNA 3'-end processing, ameliorates survival motor neuron-dependent neurological phenotypes in vivo and prevents neurodegeneration.
Nucleic Acids Res
; 50(21): 12400-12424, 2022 11 28.
Artigo
em Inglês
| MEDLINE | ID: mdl-35947650
4.
Improved detection of gene fusions by applying statistical methods reveals oncogenic RNA cancer drivers.
Proc Natl Acad Sci U S A
; 116(31): 15524-15533, 2019 07 30.
Artigo
em Inglês
| MEDLINE | ID: mdl-31308241
5.
Publisher Correction: The SpliZ generalizes 'percent spliced in' to reveal regulated splicing at single-cell resolution.
Nat Methods
; 19(5): 628, 2022 May.
Artigo
em Inglês
| MEDLINE | ID: mdl-35468970
6.
Ambiguous splice sites distinguish circRNA and linear splicing in the human genome.
Bioinformatics
; 35(8): 1263-1268, 2019 04 15.
Artigo
em Inglês
| MEDLINE | ID: mdl-30192918
7.
Efficient experimental design for uncertainty reduction in gene regulatory networks.
BMC Bioinformatics
; 16 Suppl 13: S2, 2015.
Artigo
em Inglês
| MEDLINE | ID: mdl-26423515
8.
SPLASH2 provides ultra-efficient, scalable, and unsupervised discovery on raw sequencing reads.
bioRxiv
; 2024 Mar 30.
Artigo
em Inglês
| MEDLINE | ID: mdl-36993432
9.
Interstitial macrophages are a focus of viral takeover and inflammation in COVID-19 initiation in human lung.
J Exp Med
; 221(6)2024 Jun 03.
Artigo
em Inglês
| MEDLINE | ID: mdl-38597954
10.
ReadZS detects cell type-specific and developmentally regulated RNA processing programs in single-cell RNA-seq.
Genome Biol
; 23(1): 226, 2022 10 25.
Artigo
em Inglês
| MEDLINE | ID: mdl-36284317
11.
Specific splice junction detection in single cells with SICILIAN.
Genome Biol
; 22(1): 219, 2021 08 05.
Artigo
em Inglês
| MEDLINE | ID: mdl-34353340
12.
RNA splicing programs define tissue compartments and cell types at single-cell resolution.
Elife
; 102021 09 13.
Artigo
em Inglês
| MEDLINE | ID: mdl-34515025
13.
Erratum to: Efficient experimental design for uncertainty reduction in gene regulatory networks.
BMC Bioinformatics
; 16: 410, 2015 Dec 14.
Artigo
em Inglês
| MEDLINE | ID: mdl-26652981
14.
An experimental design framework for Markovian gene regulatory networks under stationary control policy.
BMC Syst Biol
; 12(Suppl 8): 137, 2018 12 21.
Artigo
em Inglês
| MEDLINE | ID: mdl-30577732
15.
Optimal Objective-Based Experimental Design for Uncertain Dynamical Gene Networks with Experimental Error.
IEEE/ACM Trans Comput Biol Bioinform
; 15(1): 218-230, 2018.
Artigo
em Inglês
| MEDLINE | ID: mdl-27576263
16.
Sequential Experimental Design for Optimal Structural Intervention in Gene Regulatory Networks Based on the Mean Objective Cost of Uncertainty.
Cancer Inform
; 17: 1176935118790247, 2018.
Artigo
em Inglês
| MEDLINE | ID: mdl-30093796
17.
Optimal Experimental Design for Gene Regulatory Networks in the Presence of Uncertainty.
IEEE/ACM Trans Comput Biol Bioinform
; 12(4): 938-50, 2015.
Artigo
em Inglês
| MEDLINE | ID: mdl-26357334